Structural and functional annotation of the MADS-box transcription factor family in grapevine
Identifieur interne : 000047 ( Main/Exploration ); précédent : 000046; suivant : 000048Structural and functional annotation of the MADS-box transcription factor family in grapevine
Auteurs : Jérôme Grimplet [Espagne] ; José Miguel Martínez-Zapater [Espagne] ; María José Carmona [Espagne]Source :
- BMC Genomics [ 1471-2164 ] ; 2016.
Abstract
MADS-box genes encode transcription factors that are involved in developmental control and signal transduction in eukaryotes. In plants, they are associated to numerous development processes most notably those related to reproductive development: flowering induction, specification of inflorescence and flower meristems, establishment of flower organ identity, as well as regulation of fruit, seed and embryo development. Genomic analyses of MADS-box genes in different plant species are providing new relevant information on the function and evolution of this transcriptional factor family. We have performed a true genome-wide analysis of the complete set of MADS-box genes in grapevine (
A total of 90 MADS-box genes were detected in the grapevine reference genome by completing current gene annotations with a genome-wide analysis based on sequence similarity. We performed a thorough in-depth curation of all gene models and combined the results with gene expression information including RNAseq data to clarifying the expression of newly identified genes and improve their functional characterization. Curated data were uploaded to the ORCAE database for grapevine in the frame of the grapevine genome curation effort. This approach resulted in the identification of 30 additional MADS box genes. Among them, ten new MIKCC genes were identified, including a potential new group of short proteins similar to the SVP protein subfamily. The MIKC* subgroup contains six genes in grapevine that can be grouped in the S (4 genes) and P (2 genes) clades, showing less redundancy than that observed in
The genome analysis of MADS-box genes in grapevine, the characterization of their pattern of expression and the phylogenetic analysis with other plant species allowed the identification of new MADS-box genes not yet described in other plant species as well as basic characterization of their possible role, particularly in the case of type I and MIKC* genes.
The online version of this article (doi:10.1186/s12864-016-2398-7) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s12864-016-2398-7
PubMed: 26818751
PubMed Central: 4729134
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 000601
- to stream Pmc, to step Curation: 000600
- to stream Pmc, to step Checkpoint: 000033
- to stream Ncbi, to step Merge: 001E83
- to stream Ncbi, to step Curation: 001E83
- to stream Ncbi, to step Checkpoint: 001E83
- to stream Main, to step Merge: 000047
- to stream Main, to step Curation: 000047
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Structural and functional annotation of the MADS-box transcription factor family in grapevine</title><author><name sortKey="Grimplet, Jerome" sort="Grimplet, Jerome" uniqKey="Grimplet J" first="Jérôme" last="Grimplet">Jérôme Grimplet</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Instituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja), Logroño, 26007 Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Instituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja), Logroño</wicri:regionArea><wicri:noRegion>Logroño</wicri:noRegion></affiliation></author><author><name sortKey="Martinez Zapater, Jose Miguel" sort="Martinez Zapater, Jose Miguel" uniqKey="Martinez Zapater J" first="José Miguel" last="Martínez-Zapater">José Miguel Martínez-Zapater</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Instituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja), Logroño, 26007 Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Instituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja), Logroño</wicri:regionArea><wicri:noRegion>Logroño</wicri:noRegion></affiliation></author><author><name sortKey="Carmona, Maria Jose" sort="Carmona, Maria Jose" uniqKey="Carmona M" first="María José" last="Carmona">María José Carmona</name><affiliation wicri:level="3"><nlm:aff id="Aff2">Departamento de Biotecnología, Escuela Técnica Superior Ingenieros Agrónomos, Universidad Politécnica de Madrid, Madrid, 28040 Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Departamento de Biotecnología, Escuela Técnica Superior Ingenieros Agrónomos, Universidad Politécnica de Madrid, Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26818751</idno><idno type="pmc">4729134</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4729134</idno><idno type="RBID">PMC:4729134</idno><idno type="doi">10.1186/s12864-016-2398-7</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000601</idno><idno type="wicri:Area/Pmc/Curation">000600</idno><idno type="wicri:Area/Pmc/Checkpoint">000033</idno><idno type="wicri:Area/Ncbi/Merge">001E83</idno><idno type="wicri:Area/Ncbi/Curation">001E83</idno><idno type="wicri:Area/Ncbi/Checkpoint">001E83</idno><idno type="wicri:Area/Main/Merge">000047</idno><idno type="wicri:Area/Main/Curation">000047</idno><idno type="wicri:Area/Main/Exploration">000047</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Structural and functional annotation of the MADS-box transcription factor family in grapevine</title><author><name sortKey="Grimplet, Jerome" sort="Grimplet, Jerome" uniqKey="Grimplet J" first="Jérôme" last="Grimplet">Jérôme Grimplet</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Instituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja), Logroño, 26007 Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Instituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja), Logroño</wicri:regionArea><wicri:noRegion>Logroño</wicri:noRegion></affiliation></author><author><name sortKey="Martinez Zapater, Jose Miguel" sort="Martinez Zapater, Jose Miguel" uniqKey="Martinez Zapater J" first="José Miguel" last="Martínez-Zapater">José Miguel Martínez-Zapater</name><affiliation wicri:level="1"><nlm:aff id="Aff1">Instituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja), Logroño, 26007 Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Instituto de Ciencias de la Vid y del Vino (CSIC, Universidad de La Rioja, Gobierno de La Rioja), Logroño</wicri:regionArea><wicri:noRegion>Logroño</wicri:noRegion></affiliation></author><author><name sortKey="Carmona, Maria Jose" sort="Carmona, Maria Jose" uniqKey="Carmona M" first="María José" last="Carmona">María José Carmona</name><affiliation wicri:level="3"><nlm:aff id="Aff2">Departamento de Biotecnología, Escuela Técnica Superior Ingenieros Agrónomos, Universidad Politécnica de Madrid, Madrid, 28040 Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>Departamento de Biotecnología, Escuela Técnica Superior Ingenieros Agrónomos, Universidad Politécnica de Madrid, Madrid</wicri:regionArea><placeName><settlement type="city">Madrid</settlement><region nuts="2" type="region">Communauté de Madrid</region></placeName></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>MADS-box genes encode transcription factors that are involved in developmental control and signal transduction in eukaryotes. In plants, they are associated to numerous development processes most notably those related to reproductive development: flowering induction, specification of inflorescence and flower meristems, establishment of flower organ identity, as well as regulation of fruit, seed and embryo development. Genomic analyses of MADS-box genes in different plant species are providing new relevant information on the function and evolution of this transcriptional factor family. We have performed a true genome-wide analysis of the complete set of MADS-box genes in grapevine (<italic>Vitis vinifera</italic>), analyzed their expression pattern and establish their phylogenetic relationships (including MIKC* and type I MADS-box) with genes from 16 other plant species. This study was integrated to previous works on the family in grapevine.</p></sec><sec><title>Results</title><p>A total of 90 MADS-box genes were detected in the grapevine reference genome by completing current gene annotations with a genome-wide analysis based on sequence similarity. We performed a thorough in-depth curation of all gene models and combined the results with gene expression information including RNAseq data to clarifying the expression of newly identified genes and improve their functional characterization. Curated data were uploaded to the ORCAE database for grapevine in the frame of the grapevine genome curation effort. This approach resulted in the identification of 30 additional MADS box genes. Among them, ten new MIKC<sup>C</sup> genes were identified, including a potential new group of short proteins similar to the SVP protein subfamily. The MIKC* subgroup contains six genes in grapevine that can be grouped in the S (4 genes) and P (2 genes) clades, showing less redundancy than that observed in <italic>Arabidopsis thaliana</italic>. Expression pattern of these genes in grapevine is compatible with a role in male gametophyte development. Most of the identified new genes belong to the type I MADS-box genes and were classified as members of the Mα and Mγ subclasses. Ours analyses indicate that only few members of type I genes in grapevine have homology in other species and that species-specific clades appeared both in the Mα and Mγ subclasses. On the other hand, as deduced from the phylogenetic analysis with other plant species, genes that can be crucial for development of central cell, endosperm and embryos seems to be conserved in plants.</p></sec><sec><title>Conclusions</title><p>The genome analysis of MADS-box genes in grapevine, the characterization of their pattern of expression and the phylogenetic analysis with other plant species allowed the identification of new MADS-box genes not yet described in other plant species as well as basic characterization of their possible role, particularly in the case of type I and MIKC* genes.</p></sec><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s12864-016-2398-7) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Gramzow, L" uniqKey="Gramzow L">L Gramzow</name></author><author><name sortKey="Theissen, G" uniqKey="Theissen G">G Theissen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Alvarez Buylla, Er" uniqKey="Alvarez Buylla E">ER Alvarez-Buylla</name></author><author><name sortKey="Pelaz, S" uniqKey="Pelaz S">S Pelaz</name></author><author><name sortKey="Liljegren, Sj" uniqKey="Liljegren S">SJ Liljegren</name></author><author><name sortKey="Gold, Se" uniqKey="Gold S">SE Gold</name></author><author><name sortKey="Burgeff, C" uniqKey="Burgeff C">C Burgeff</name></author><author><name sortKey="Ditta, Gs" uniqKey="Ditta G">GS Ditta</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="De Bodt, S" uniqKey="De Bodt S">S De Bodt</name></author><author><name sortKey="Raes, J" uniqKey="Raes J">J Raes</name></author><author><name sortKey="Van De Peer, Y" uniqKey="Van De Peer Y">Y Van de Peer</name></author><author><name sortKey="Theissen, G" uniqKey="Theissen G">G Theissen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gramzow, L" uniqKey="Gramzow L">L Gramzow</name></author><author><name sortKey="Thei En, G" uniqKey="Thei En G">G Theißen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Theissen, G" uniqKey="Theissen G">G Theissen</name></author><author><name sortKey="Kim, Jt" uniqKey="Kim J">JT Kim</name></author><author><name sortKey="Saedler, H" uniqKey="Saedler H">H Saedler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kaufmann, K" uniqKey="Kaufmann K">K Kaufmann</name></author><author><name sortKey="Melzer, R" uniqKey="Melzer R">R Melzer</name></author><author><name sortKey="Theissen, G" uniqKey="Theissen G">G Theissen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Henschel, K" uniqKey="Henschel K">K Henschel</name></author><author><name sortKey="Kofuji, R" uniqKey="Kofuji R">R Kofuji</name></author><author><name sortKey="Hasebe, M" uniqKey="Hasebe M">M Hasebe</name></author><author><name sortKey="Saedler, H" uniqKey="Saedler H">H Saedler</name></author><author><name sortKey="Munster, T" uniqKey="Munster T">T Munster</name></author><author><name sortKey="Theissen, G" uniqKey="Theissen G">G Theissen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Verelst, W" uniqKey="Verelst W">W Verelst</name></author><author><name sortKey="Twell, D" uniqKey="Twell D">D Twell</name></author><author><name sortKey="De Folter, S" uniqKey="De Folter S">S de Folter</name></author><author><name sortKey="Immink, R" uniqKey="Immink R">R Immink</name></author><author><name sortKey="Saedler, H" uniqKey="Saedler H">H Saedler</name></author><author><name sortKey="Munster, T" uniqKey="Munster T">T Munster</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bowman, Jl" uniqKey="Bowman J">JL Bowman</name></author><author><name sortKey="Smyth, Dr" uniqKey="Smyth D">DR Smyth</name></author><author><name sortKey="Meyerowitz, Em" uniqKey="Meyerowitz E">EM Meyerowitz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Colombo, L" uniqKey="Colombo L">L Colombo</name></author><author><name sortKey="Franken, J" uniqKey="Franken J">J Franken</name></author><author><name sortKey="Koetje, E" uniqKey="Koetje E">E Koetje</name></author><author><name sortKey="Van Went, J" uniqKey="Van Went J">J van Went</name></author><author><name sortKey="Dons, Hj" uniqKey="Dons H">HJ Dons</name></author><author><name sortKey="Angenent, Gc" uniqKey="Angenent G">GC Angenent</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Theissen, G" uniqKey="Theissen G">G Theissen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Immink, Rgh" uniqKey="Immink R">RGH Immink</name></author><author><name sortKey="Ferrario, S" uniqKey="Ferrario S">S Ferrario</name></author><author><name sortKey="Busscher Lange, J" uniqKey="Busscher Lange J">J Busscher-Lange</name></author><author><name sortKey="Kooiker, M" uniqKey="Kooiker M">M Kooiker</name></author><author><name sortKey="Busscher, M" uniqKey="Busscher M">M Busscher</name></author><author><name sortKey="Angenent, Gc" uniqKey="Angenent G">GC Angenent</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rijpkema, As" uniqKey="Rijpkema A">AS Rijpkema</name></author><author><name sortKey="Royaert, S" uniqKey="Royaert S">S Royaert</name></author><author><name sortKey="Zethof, J" uniqKey="Zethof J">J Zethof</name></author><author><name sortKey="Van Der Weerden, G" uniqKey="Van Der Weerden G">G van der Weerden</name></author><author><name sortKey="Gerats, T" uniqKey="Gerats T">T Gerats</name></author><author><name sortKey="Vandenbussche, M" uniqKey="Vandenbussche M">M Vandenbussche</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smaczniak, C" uniqKey="Smaczniak C">C Smaczniak</name></author><author><name sortKey="Immink, Rg" uniqKey="Immink R">RG Immink</name></author><author><name sortKey="Muino, Jm" uniqKey="Muino J">JM Muino</name></author><author><name sortKey="Blanvillain, R" uniqKey="Blanvillain R">R Blanvillain</name></author><author><name sortKey="Busscher, M" uniqKey="Busscher M">M Busscher</name></author><author><name sortKey="Busscher Lange, J" uniqKey="Busscher Lange J">J Busscher-Lange</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, D" uniqKey="Li D">D Li</name></author><author><name sortKey="Liu, C" uniqKey="Liu C">C Liu</name></author><author><name sortKey="Shen, L" uniqKey="Shen L">L Shen</name></author><author><name sortKey="Wu, Y" uniqKey="Wu Y">Y Wu</name></author><author><name sortKey="Chen, H" uniqKey="Chen H">H Chen</name></author><author><name sortKey="Robertson, M" uniqKey="Robertson M">M Robertson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, C" uniqKey="Liu C">C Liu</name></author><author><name sortKey="Chen, H" uniqKey="Chen H">H Chen</name></author><author><name sortKey="Er, Hl" uniqKey="Er H">HL Er</name></author><author><name sortKey="Soo, Hm" uniqKey="Soo H">HM Soo</name></author><author><name sortKey="Kumar, Pp" uniqKey="Kumar P">PP Kumar</name></author><author><name sortKey="Han, Jh" uniqKey="Han J">JH Han</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lee, J" uniqKey="Lee J">J Lee</name></author><author><name sortKey="Lee, I" uniqKey="Lee I">I Lee</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Amasino, R" uniqKey="Amasino R">R Amasino</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Alvarez Buylla, Er" uniqKey="Alvarez Buylla E">ER Alvarez-Buylla</name></author><author><name sortKey="Liljegren, Sj" uniqKey="Liljegren S">SJ Liljegren</name></author><author><name sortKey="Pelaz, S" uniqKey="Pelaz S">S Pelaz</name></author><author><name sortKey="Gold, Se" uniqKey="Gold S">SE Gold</name></author><author><name sortKey="Burgeff, C" uniqKey="Burgeff C">C Burgeff</name></author><author><name sortKey="Ditta, Gs" uniqKey="Ditta G">GS Ditta</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lehti Shiu, Md" uniqKey="Lehti Shiu M">MD Lehti-Shiu</name></author><author><name sortKey="Adamczyk, Bj" uniqKey="Adamczyk B">BJ Adamczyk</name></author><author><name sortKey="Fernandez, De" uniqKey="Fernandez D">DE Fernandez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Adamczyk, Bj" uniqKey="Adamczyk B">BJ Adamczyk</name></author><author><name sortKey="Lehti Shiu, Md" uniqKey="Lehti Shiu M">MD Lehti-Shiu</name></author><author><name sortKey="Fernandez, De" uniqKey="Fernandez D">DE Fernandez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rounsley, Sd" uniqKey="Rounsley S">SD Rounsley</name></author><author><name sortKey="Ditta, Gs" uniqKey="Ditta G">GS Ditta</name></author><author><name sortKey="Yanofsky, Mf" uniqKey="Yanofsky M">MF Yanofsky</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Burgeff, C" uniqKey="Burgeff C">C Burgeff</name></author><author><name sortKey="Liljegren, Sj" uniqKey="Liljegren S">SJ Liljegren</name></author><author><name sortKey="Tapia Lopez, R" uniqKey="Tapia Lopez R">R Tapia-Lopez</name></author><author><name sortKey="Yanofsky, Mf" uniqKey="Yanofsky M">MF Yanofsky</name></author><author><name sortKey="Alvarez Buylla, Er" uniqKey="Alvarez Buylla E">ER Alvarez-Buylla</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tapia Lopez, R" uniqKey="Tapia Lopez R">R Tapia-Lopez</name></author><author><name sortKey="Garcia Ponce, B" uniqKey="Garcia Ponce B">B Garcia-Ponce</name></author><author><name sortKey="Dubrovsky, Jg" uniqKey="Dubrovsky J">JG Dubrovsky</name></author><author><name sortKey="Garay Arroyo, A" uniqKey="Garay Arroyo A">A Garay-Arroyo</name></author><author><name sortKey="Perez Ruiz, Rv" uniqKey="Perez Ruiz R">RV Perez-Ruiz</name></author><author><name sortKey="Kim, Sh" uniqKey="Kim S">SH Kim</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Han, P" uniqKey="Han P">P Han</name></author><author><name sortKey="Garcia Ponce, B" uniqKey="Garcia Ponce B">B Garcia-Ponce</name></author><author><name sortKey="Fonseca Salazar, G" uniqKey="Fonseca Salazar G">G Fonseca-Salazar</name></author><author><name sortKey="Alvarez Buylla, Er" uniqKey="Alvarez Buylla E">ER Alvarez-Buylla</name></author><author><name sortKey="Yu, H" uniqKey="Yu H">H Yu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Parenicova, L" uniqKey="Parenicova L">L Parenicova</name></author><author><name sortKey="De Folter, S" uniqKey="De Folter S">S de Folter</name></author><author><name sortKey="Kieffer, M" uniqKey="Kieffer M">M Kieffer</name></author><author><name sortKey="Horner, Ds" uniqKey="Horner D">DS Horner</name></author><author><name sortKey="Favalli, C" uniqKey="Favalli C">C Favalli</name></author><author><name sortKey="Busscher, J" uniqKey="Busscher J">J Busscher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kwantes, M" uniqKey="Kwantes M">M Kwantes</name></author><author><name sortKey="Liebsch, D" uniqKey="Liebsch D">D Liebsch</name></author><author><name sortKey="Verelst, W" uniqKey="Verelst W">W Verelst</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nam, J" uniqKey="Nam J">J Nam</name></author><author><name sortKey="Kim, J" uniqKey="Kim J">J Kim</name></author><author><name sortKey="Lee, S" uniqKey="Lee S">S Lee</name></author><author><name sortKey="An, G" uniqKey="An G">G An</name></author><author><name sortKey="Ma, H" uniqKey="Ma H">H Ma</name></author><author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="De Folter, S" uniqKey="De Folter S">S de Folter</name></author><author><name sortKey="Busscher, J" uniqKey="Busscher J">J Busscher</name></author><author><name sortKey="Colombo, L" uniqKey="Colombo L">L Colombo</name></author><author><name sortKey="Losa, A" uniqKey="Losa A">A Losa</name></author><author><name sortKey="Angenent, Gc" uniqKey="Angenent G">GC Angenent</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Adamczyk, Bj" uniqKey="Adamczyk B">BJ Adamczyk</name></author><author><name sortKey="Fernandez, De" uniqKey="Fernandez D">DE Fernandez</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wells, Ce" uniqKey="Wells C">CE Wells</name></author><author><name sortKey="Vendramin, E" uniqKey="Vendramin E">E Vendramin</name></author><author><name sortKey="Jimenez Tarodo, S" uniqKey="Jimenez Tarodo S">S Jimenez Tarodo</name></author><author><name sortKey="Verde, I" uniqKey="Verde I">I Verde</name></author><author><name sortKey="Bielenberg, Dg" uniqKey="Bielenberg D">DG Bielenberg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bemer, M" uniqKey="Bemer M">M Bemer</name></author><author><name sortKey="Heijmans, K" uniqKey="Heijmans K">K Heijmans</name></author><author><name sortKey="Airoldi, C" uniqKey="Airoldi C">C Airoldi</name></author><author><name sortKey="Davies, B" uniqKey="Davies B">B Davies</name></author><author><name sortKey="Angenent, Gc" uniqKey="Angenent G">GC Angenent</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Masiero, S" uniqKey="Masiero S">S Masiero</name></author><author><name sortKey="Colombo, L" uniqKey="Colombo L">L Colombo</name></author><author><name sortKey="Grini, Pe" uniqKey="Grini P">PE Grini</name></author><author><name sortKey="Schnittger, A" uniqKey="Schnittger A">A Schnittger</name></author><author><name sortKey="Kater, Mm" uniqKey="Kater M">MM Kater</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="De Folter, S" uniqKey="De Folter S">S de Folter</name></author><author><name sortKey="Immink, Rg" uniqKey="Immink R">RG Immink</name></author><author><name sortKey="Kieffer, M" uniqKey="Kieffer M">M Kieffer</name></author><author><name sortKey="Parenicova, L" uniqKey="Parenicova L">L Parenicova</name></author><author><name sortKey="Henz, Sr" uniqKey="Henz S">SR Henz</name></author><author><name sortKey="Weigel, D" uniqKey="Weigel D">D Weigel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jaillon, O" uniqKey="Jaillon O">O Jaillon</name></author><author><name sortKey="Aury, Jm" uniqKey="Aury J">JM Aury</name></author><author><name sortKey="Noel, B" uniqKey="Noel B">B Noel</name></author><author><name sortKey="Policriti, A" uniqKey="Policriti A">A Policriti</name></author><author><name sortKey="Clepet, C" uniqKey="Clepet C">C Clepet</name></author><author><name sortKey="Casagrande, A" uniqKey="Casagrande A">A Casagrande</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sterck, L" uniqKey="Sterck L">L Sterck</name></author><author><name sortKey="Billiau, K" uniqKey="Billiau K">K Billiau</name></author><author><name sortKey="Abeel, T" uniqKey="Abeel T">T Abeel</name></author><author><name sortKey="Rouze, P" uniqKey="Rouze P">P Rouze</name></author><author><name sortKey="Van De Peer, Y" uniqKey="Van De Peer Y">Y Van de Peer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Diaz Riquelme, J" uniqKey="Diaz Riquelme J">J Diaz-Riquelme</name></author><author><name sortKey="Lijavetzky, D" uniqKey="Lijavetzky D">D Lijavetzky</name></author><author><name sortKey="Martinez Zapater, Jm" uniqKey="Martinez Zapater J">JM Martinez-Zapater</name></author><author><name sortKey="Carmona, Mj" uniqKey="Carmona M">MJ Carmona</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, L" uniqKey="Wang L">L Wang</name></author><author><name sortKey="Yin, X" uniqKey="Yin X">X Yin</name></author><author><name sortKey="Cheng, C" uniqKey="Cheng C">C Cheng</name></author><author><name sortKey="Wang, H" uniqKey="Wang H">H Wang</name></author><author><name sortKey="Guo, R" uniqKey="Guo R">R Guo</name></author><author><name sortKey="Xu, X" uniqKey="Xu X">X Xu</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Grimplet, J" uniqKey="Grimplet J">J Grimplet</name></author><author><name sortKey="Adam Blondon, A F" uniqKey="Adam Blondon A">A-F Adam-Blondon</name></author><author><name sortKey="Bert, P F" uniqKey="Bert P">P-F Bert</name></author><author><name sortKey="Bitz, O" uniqKey="Bitz O">O Bitz</name></author><author><name sortKey="Cantu, D" uniqKey="Cantu D">D Cantu</name></author><author><name sortKey="Davies, C" uniqKey="Davies C">C Davies</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Grimplet, J" uniqKey="Grimplet J">J Grimplet</name></author><author><name sortKey="Van Hemert, J" uniqKey="Van Hemert J">J Van Hemert</name></author><author><name sortKey="Carbonell Bejerano, P" uniqKey="Carbonell Bejerano P">P Carbonell-Bejerano</name></author><author><name sortKey="Diaz Riquelme, J" uniqKey="Diaz Riquelme J">J Diaz-Riquelme</name></author><author><name sortKey="Dickerson, J" uniqKey="Dickerson J">J Dickerson</name></author><author><name sortKey="Fennell, A" uniqKey="Fennell A">A Fennell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Royo, C" uniqKey="Royo C">C Royo</name></author><author><name sortKey="Carbonell Bejerano, P" uniqKey="Carbonell Bejerano P">P Carbonell-Bejerano</name></author><author><name sortKey="Torres Perez, R" uniqKey="Torres Perez R">R Torres-Perez</name></author><author><name sortKey="Nebish, A" uniqKey="Nebish A">A Nebish</name></author><author><name sortKey="Martinez, O" uniqKey="Martinez O">O Martinez</name></author><author><name sortKey="Rey, M" uniqKey="Rey M">M Rey</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Velasco, R" uniqKey="Velasco R">R Velasco</name></author><author><name sortKey="Zharkikh, A" uniqKey="Zharkikh A">A Zharkikh</name></author><author><name sortKey="Troggio, M" uniqKey="Troggio M">M Troggio</name></author><author><name sortKey="Cartwright, Da" uniqKey="Cartwright D">DA Cartwright</name></author><author><name sortKey="Cestaro, A" uniqKey="Cestaro A">A Cestaro</name></author><author><name sortKey="Pruss, D" uniqKey="Pruss D">D Pruss</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vilella, Aj" uniqKey="Vilella A">AJ Vilella</name></author><author><name sortKey="Severin, J" uniqKey="Severin J">J Severin</name></author><author><name sortKey="Ureta Vidal, A" uniqKey="Ureta Vidal A">A Ureta-Vidal</name></author><author><name sortKey="Heng, L" uniqKey="Heng L">L Heng</name></author><author><name sortKey="Durbin, R" uniqKey="Durbin R">R Durbin</name></author><author><name sortKey="Birney, E" uniqKey="Birney E">E Birney</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fasoli, M" uniqKey="Fasoli M">M Fasoli</name></author><author><name sortKey="Dal Santo, S" uniqKey="Dal Santo S">S Dal Santo</name></author><author><name sortKey="Zenoni, S" uniqKey="Zenoni S">S Zenoni</name></author><author><name sortKey="Tornielli, Gb" uniqKey="Tornielli G">GB Tornielli</name></author><author><name sortKey="Farina, L" uniqKey="Farina L">L Farina</name></author><author><name sortKey="Zamboni, A" uniqKey="Zamboni A">A Zamboni</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Leseberg, Ch" uniqKey="Leseberg C">CH Leseberg</name></author><author><name sortKey="Li, A" uniqKey="Li A">A Li</name></author><author><name sortKey="Kang, H" uniqKey="Kang H">H Kang</name></author><author><name sortKey="Duvall, M" uniqKey="Duvall M">M Duvall</name></author><author><name sortKey="Mao, L" uniqKey="Mao L">L Mao</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mao, L" uniqKey="Mao L">L Mao</name></author><author><name sortKey="Begum, D" uniqKey="Begum D">D Begum</name></author><author><name sortKey="Chuang, Hw" uniqKey="Chuang H">HW Chuang</name></author><author><name sortKey="Budiman, Ma" uniqKey="Budiman M">MA Budiman</name></author><author><name sortKey="Szymkowiak, Ej" uniqKey="Szymkowiak E">EJ Szymkowiak</name></author><author><name sortKey="Irish, Ee" uniqKey="Irish E">EE Irish</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Horvath, Dp" uniqKey="Horvath D">DP Horvath</name></author><author><name sortKey="Chao, Ws" uniqKey="Chao W">WS Chao</name></author><author><name sortKey="Suttle, Jc" uniqKey="Suttle J">JC Suttle</name></author><author><name sortKey="Thimmapuram, J" uniqKey="Thimmapuram J">J Thimmapuram</name></author><author><name sortKey="Anderson, Jv" uniqKey="Anderson J">JV Anderson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Diaz Riquelme, J" uniqKey="Diaz Riquelme J">J Diaz-Riquelme</name></author><author><name sortKey="Martinez Zapater, Jm" uniqKey="Martinez Zapater J">JM Martinez-Zapater</name></author><author><name sortKey="Carmona, Mj" uniqKey="Carmona M">MJ Carmona</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kofuji, R" uniqKey="Kofuji R">R Kofuji</name></author><author><name sortKey="Sumikawa, N" uniqKey="Sumikawa N">N Sumikawa</name></author><author><name sortKey="Yamasaki, M" uniqKey="Yamasaki M">M Yamasaki</name></author><author><name sortKey="Kondo, K" uniqKey="Kondo K">K Kondo</name></author><author><name sortKey="Ueda, K" uniqKey="Ueda K">K Ueda</name></author><author><name sortKey="Ito, M" uniqKey="Ito M">M Ito</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Honys, D" uniqKey="Honys D">D Honys</name></author><author><name sortKey="Twell, D" uniqKey="Twell D">D Twell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, C" uniqKey="Liu C">C Liu</name></author><author><name sortKey="Teo, Zw" uniqKey="Teo Z">ZW Teo</name></author><author><name sortKey="Bi, Y" uniqKey="Bi Y">Y Bi</name></author><author><name sortKey="Song, S" uniqKey="Song S">S Song</name></author><author><name sortKey="Xi, W" uniqKey="Xi W">W Xi</name></author><author><name sortKey="Yang, X" uniqKey="Yang X">X Yang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bemer, M" uniqKey="Bemer M">M Bemer</name></author><author><name sortKey="Wolters Arts, M" uniqKey="Wolters Arts M">M Wolters-Arts</name></author><author><name sortKey="Grossniklaus, U" uniqKey="Grossniklaus U">U Grossniklaus</name></author><author><name sortKey="Angenent, Gc" uniqKey="Angenent G">GC Angenent</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kang, Ih" uniqKey="Kang I">IH Kang</name></author><author><name sortKey="Steffen, Jg" uniqKey="Steffen J">JG Steffen</name></author><author><name sortKey="Portereiko, Mf" uniqKey="Portereiko M">MF Portereiko</name></author><author><name sortKey="Lloyd, A" uniqKey="Lloyd A">A Lloyd</name></author><author><name sortKey="Drews, Gn" uniqKey="Drews G">GN Drews</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Colombo, M" uniqKey="Colombo M">M Colombo</name></author><author><name sortKey="Masiero, S" uniqKey="Masiero S">S Masiero</name></author><author><name sortKey="Vanzulli, S" uniqKey="Vanzulli S">S Vanzulli</name></author><author><name sortKey="Lardelli, P" uniqKey="Lardelli P">P Lardelli</name></author><author><name sortKey="Kater, Mm" uniqKey="Kater M">MM Kater</name></author><author><name sortKey="Colombo, L" uniqKey="Colombo L">L Colombo</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Portereiko, Mf" uniqKey="Portereiko M">MF Portereiko</name></author><author><name sortKey="Lloyd, A" uniqKey="Lloyd A">A Lloyd</name></author><author><name sortKey="Steffen, Jg" uniqKey="Steffen J">JG Steffen</name></author><author><name sortKey="Punwani, Ja" uniqKey="Punwani J">JA Punwani</name></author><author><name sortKey="Otsuga, D" uniqKey="Otsuga D">D Otsuga</name></author><author><name sortKey="Drews, Gn" uniqKey="Drews G">GN Drews</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Steffen, Jg" uniqKey="Steffen J">JG Steffen</name></author><author><name sortKey="Kang, Ih" uniqKey="Kang I">IH Kang</name></author><author><name sortKey="Portereiko, Mf" uniqKey="Portereiko M">MF Portereiko</name></author><author><name sortKey="Lloyd, A" uniqKey="Lloyd A">A Lloyd</name></author><author><name sortKey="Drews, Gn" uniqKey="Drews G">GN Drews</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Okonechnikov, K" uniqKey="Okonechnikov K">K Okonechnikov</name></author><author><name sortKey="Golosova, O" uniqKey="Golosova O">O Golosova</name></author><author><name sortKey="Fursov, M" uniqKey="Fursov M">M Fursov</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kall, L" uniqKey="Kall L">L Kall</name></author><author><name sortKey="Krogh, A" uniqKey="Krogh A">A Krogh</name></author><author><name sortKey="Sonnhammer, El" uniqKey="Sonnhammer E">EL Sonnhammer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lupas, A" uniqKey="Lupas A">A Lupas</name></author><author><name sortKey="Van Dyke, M" uniqKey="Van Dyke M">M Van Dyke</name></author><author><name sortKey="Stock, J" uniqKey="Stock J">J Stock</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fink, Jl" uniqKey="Fink J">JL Fink</name></author><author><name sortKey="Hamilton, N" uniqKey="Hamilton N">N Hamilton</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lamesch, P" uniqKey="Lamesch P">P Lamesch</name></author><author><name sortKey="Berardini, Tz" uniqKey="Berardini T">TZ Berardini</name></author><author><name sortKey="Li, D" uniqKey="Li D">D Li</name></author><author><name sortKey="Swarbreck, D" uniqKey="Swarbreck D">D Swarbreck</name></author><author><name sortKey="Wilks, C" uniqKey="Wilks C">C Wilks</name></author><author><name sortKey="Sasidharan, R" uniqKey="Sasidharan R">R Sasidharan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tamura, K" uniqKey="Tamura K">K Tamura</name></author><author><name sortKey="Stecher, G" uniqKey="Stecher G">G Stecher</name></author><author><name sortKey="Peterson, D" uniqKey="Peterson D">D Peterson</name></author><author><name sortKey="Filipski, A" uniqKey="Filipski A">A Filipski</name></author><author><name sortKey="Kumar, S" uniqKey="Kumar S">S Kumar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Edgar, Rc" uniqKey="Edgar R">RC Edgar</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jones, Dt" uniqKey="Jones D">DT Jones</name></author><author><name sortKey="Taylor, Wr" uniqKey="Taylor W">WR Taylor</name></author><author><name sortKey="Thornton, Jm" uniqKey="Thornton J">JM Thornton</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Felsenstein, J" uniqKey="Felsenstein J">J Felsenstein</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Espagne</li></country><region><li>Communauté de Madrid</li></region><settlement><li>Madrid</li></settlement></list><tree><country name="Espagne"><noRegion><name sortKey="Grimplet, Jerome" sort="Grimplet, Jerome" uniqKey="Grimplet J" first="Jérôme" last="Grimplet">Jérôme Grimplet</name></noRegion><name sortKey="Carmona, Maria Jose" sort="Carmona, Maria Jose" uniqKey="Carmona M" first="María José" last="Carmona">María José Carmona</name><name sortKey="Martinez Zapater, Jose Miguel" sort="Martinez Zapater, Jose Miguel" uniqKey="Martinez Zapater J" first="José Miguel" last="Martínez-Zapater">José Miguel Martínez-Zapater</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000047 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000047 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Bois
|area= OrangerV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= PMC:4729134
|texte= Structural and functional annotation of the MADS-box transcription factor family in grapevine
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:26818751" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a OrangerV1
| This area was generated with Dilib version V0.6.25. |  |